Boston GC, Gil Hanse designs, is the highest rated on the modern list ending in a par-3.
Tillinghast's Binghamton CC ends that way, as does Ross' Makatewah in Cincinnati. Willie Park's par-3 18th at Congress Lake (Ohio) is still in place. I have a list of 40 such courses, half of which have held prominent events, which I'll post somewhere or publish.