It's too bad Mike didn't name names on the course he found beautiful, but disappointingly designed!
We've discussed before how hard it is to separate the two. It would be nice to just rate the holes from 1-18, but even that list of the top par-5's in Britain on the concurrent thread has more than a couple of holes that aren't anything special, architecturally, and that was specifically broken down to whether the individual holes were great.
It's not hard to understand the problem. The 4th hole at Pacific Dunes is very good strategically -- hit the drive away from the cliff edge, leave yourself a much tougher approach back toward it -- but if you replaced the "cliff edge" with a row of houses, nobody would like it much. [And you could say exactly the same of the 7th at Ballybunion, or the 10th at Pebble Beach.]
In the end, if you're an architect, you use the beauty to your advantage. It's not our fault if people overrate it for that. But it is our fault if we don't incorporate interesting golf holes into the setting.