Winged Foot East was the one that leapt to mind when I read the thread title. I think the sequencing is better. I like the routing better. Just generally like the course better. But I've got a couple more...
1. Cabot Links - may be unfair to put this one in here. But while Cabot Cliffs has all the big sister curves and looks and sass, little sis Links is a damn fine golf course
2. Royal Troon Portland - How many clubs have a wonderful Alister MacKenzie links course as their "second course"? I know the architecturati like to rag on Troon a little bit, but I love the Old Course there. And I love the Portland as well.
3. Baltusrol Upper. Gimme the Upper at least as many times as the Lower in a 10-round span.
4. The Dunes course at MPCC. The Stranz showcase Shore course is all it's cracked up to be, for sure. But the Dunes course (especially after new renovation) is just as good.
5. Olympic Ocean. If the Lake just beats you down (as it does most), the Ocean will lift you up. Again, great variety and interest, with a little more compassion.