45. Oakland, CA
43. Long Beach, CA
36. Sacramento, CA
34. Fresno, CA
13. Fort Worth, TX
1. New York, NY
Interestingly, all of these at one point had a course named after the city.
Oakland GC - founded in 1897, NLE by 1905 - In addition, Lake Chabot was known as Oakland Municipal GC for a while.
Long Beach CC - founded in 1925, later known as Meadowlark CC - In addition, Recreation Park was once known as Long Beach Municipal GC.
Sacramento - described by Phil above.
Fresno - this is stretching things, but Riverside GC was also known as Riverside of Fresno GC.
Fort Worth CC - founded in 1903 and seemingly replace by Fort Worth G&CC in 1906. River Crest CC was known as both Fort Worth GC and Fort Worth CC. Also, Worth Hills was known as Fort Worth Municipal GC.
New York - there were a number of courses with New York in the name, including New York Athletic Club Links (Hunter's Island), New York CC (Bankville), New York GC (Great Neck), New York Military Academy GC (Cornwall on Hudson) and New York Municipal Course (City Island?). In addition, there was the New York Newspaper GC which I believe played out of Van Cortlandt and the New York Athletic Club as an early name for what we know of as Winged Foot.