I'll take a run at a selection I'm not comfortable with.
California GC of San Francisco is ranked #73. That's a bit high. Holes 10, 11, 13, 14, 15 and 17 traverse up and down the same slope in a somewhat monotonous fashion. The 12th hole is the only visually memorable hole on the course. Pasatiempo is clearly better, with several holes more distinctive (2, 3, 11, 14, 16) than any hole at the Cal Club, except the 12th. Furthermore, it's a bad weather site, the same weather conditions that made Candlestick Park such a tough baseball park. It's also a bit too hilly for my liking. With that said, the course is excellent, especially the front nine. However, I consider Pasatiempo and Old Macdonald better, and Bandon Trails much better. I would enjoy a reasoned argument for the Cal Club belonging on this list.
While I'm at it, I'll reiterate my comment that #25 San Francisco GC has ten long holes that are oriented east to west, or west to east. They are a well varied group, but there are lots of parallel long holes, the primary criticism of Firestone GC's tournament course.
Just making conversation.