This is the most recent list. The link I posted says updated 2016 but was not the same as this list.
I worked in an area where ratings of human behavior were used as part of rating scales. Raters were generally trained to some criteria in terms of inter-rater reliability and validation in terms of external criteria. It seems that course rankings would benefit from similar training for raters and publishing explicit weightings for factors used in ranking.
On the other hand, If someone were to take the rankings of Golf Digest versus Golf Magazine and how much overlap there was (irrespective of ranking) and run correlational measure of actual rankings when both were included, I suspect there would be a high level of agreement or relatively high correlation measures. The fact that something might have gone from 95 to 103 could be a function of error of measurement or the introduction of a few newer courses or improvements in others.
Charles Lund
Golf Magazine – 2016 to 2017 Top 100 Public Courses
1. Pebble Beach Golf Links Pebble Beach, Calif.
2. Pacific Dunes Bandon, Ore.
3. Pinehurst Resort (No. 2) Pinehurst, N.C.
4. Bethpage State Park (Black) Farmingdale, N.Y.
5. Whistling Straits Golf Club (Straits) Kohler, Wisc.
6. The Ocean Course at Kiawah Island Resort
Kiawah Island, S.C.
7. TPC Sawgrass (Players Stadium) Ponte Vedra Beach, Fla.
8. Bandon Dunes Bandon, Ore.
9. Harbour Town Golf Links Hilton Head Island, S.C.
10. Streamsong Resort (Red) Streamsong, Fla.
11. Old Macdonald Bandon, Ore.
12. Bandon Trails Bandon, Ore.
13. Pasatiempo Golf Club Santa Cruz, Calif.
14. Streamsong Resort (Blue) Streamsong, Fla.
15. Spyglass Hill Golf Course Pebble Beach, Calif.
16. Shadow Creek North Las Vegas, Nev.
17. Chambers Bay University Place, Wash.
18. Trump National Doral (Blue Monster) Miami, Fla.
19. Blackwolf Run (River) Kohler, Wis.
20. Torrey Pines Golf Course (South) La Jolla, Calif.
21. Forest Dunes Golf Club Roscommon, Minn.
22. Sea Island Golf Club (Seaside) St. Simons Island, Ga.
23. Erin Hills Golf Course Erin, Wis.
24. Kapalua Resort (Plantation) Kapalua, Maui, Hawaii
25. Troon North Golf Club (Pinnacle) Scottsdale, Ariz.
26. Omni Homestead (Cascades) Hot Springs, Va.
27. Trump National Golf Club Los Angeles
Rancho Palos Verdes, Calif.
28. The Highland Course at Primland Resort
Meadows of Dan, Va.
29. Caledonia Golf and Fish Club Pawleys Island, S.C.
30. Fallen Oak at Beau Rivage Resort Biloxi, Miss.
31. Cog Hill (No. 4) Lemont, Ill.
32. Mauna Kea Golf Course Kamuela, Big Island, Hawaii
33. Dancing Rabbit (Azaleas) Choctaw, Miss.
34. Paa-Ko Ridge Golf Club Sandia Park, N.M.
35. World Woods (Pine Barrens) Brooksville, Fla.
36. Arcadia Bluffs Golf Club Arcadia, Mich.
37. The Greenbrier (Old White TPC) White Sulphur Springs, W.V.
38. Pronghorn Resort (Nicklaus) Bend, Ore.
39. Dunes Golf and Beach Club Myrtle Beach, S.C.
40. We-Ko-Pa Golf Club (Saguaro) Fort McDowell, Ariz.
41. Reynolds Lake Oconee (Great Waters) Greensboro, Ga.
42. Taconic Golf Club Williamstown, Mass.
43. Trump Golf Links at Ferry Point Bronx, N.Y.
44. Manele Golf Course Lanai City, Lanai, Hawaii
45. Arnold Palmer’s Bay Hill Club (Champion) Orlando, Fla.
46. We-Ko-Pa Golf Club (Cholla) Fort McDowell, Ariz.
47. The Links at Spanish Bay Pebble Beach, Calif.
48. Gamble Sands Brewster, Wash.
49. Bulle Rock Havre de Grace, Md.
50. CordeValle San Martin, Calif.
51. Red Sky Ranch (Norman) Wolcott, Colo.
52. May River Golf Club at Palmetto Bluff Bluffton, S.C.
53. Pine Needles Lodge and Golf Club Southern Pines, N.C.
54. The Quarry at Giants Ridge Biwabik, Minn.
55. Golden Horseshoe Golf Club (Gold) Williamsburg, Va.
56. PGA West (TPC Stadium) La Quinta, Calif.
57. Dormie Club West End, N.C.
58. Troon North Golf Club (Monument) Scottsdale, Ariz.
59. The Harvester Golf Club Rhodes, Iowa
60. Cascata Boulder City, Nev.
61. Mid Pines Inn and Golf Club Southern Pines, N.C.
62. French Lick Resort (Pete Dye) French Lick, Ind.
63. Reynolds Lake Oconee (Oconee) Greensboro, Ga.
64. Pumpkin Ridge Golf Club (Ghost Creek)
North Plains, Ore.
65. Karsten Creek Golf Club Stillwater, Okla.
66. Crosswater at Sunriver Resort Sunriver, Ore.
67. The Broadmoor (East) Colorado Springs, Colo.
68. Atunyote at Turning Stone Resort Verona, N.Y.
69. Linville Golf Club Linville, N.C.
70. The Virtues Golf Club Nashport, Ohio
71. Wolf Creek Golf Club Mesquite, Nev.
72. Innisbrook Resort (Copperhead) Palm Harbor, Fla.
73. Wilderness Club Eureka, Mont.
74. Atlantic City Country Club Northfield, N.J.
75.The Links at Lighthouse Sound Bishopville, Md.
76. The Prairie Club (Dunes) Valentine, Neb.
77. True Blue Pawleys Island, S.C.
78. SentryWorld Stevens Point, Wis.
79. Whistling Straits Golf Club (Irish) Kohler, Wis.
80. Marquette Golf Club (Greywalls) Marquette, Mich.
81. Omni Barton Creek Resort (Fazio Canyons) Austin, Tex.
82. Lake of Isles (North) North Stonington, Conn.
83. Tullymore Golf Resort Stanwood, Mich.
84. Ak-Chin Southern Dunes Golf Club Maricopa, Ariz.
85. Barefoot Resort (Love) North Myrtle Beach, S.C.
86. Hammock Beach Resort (Ocean) Palm Coast, Fla.
87. The Golf Courses of Lawsonia (Links) Green Lake, Wis.
88. Tobacco Road Golf Club Sanford, N.C.
89. Pelican Hill Golf Club (Ocean South) Newport Coast, Calif.
90. The Glen Club Glenview, Ill.
91. Wild Horse Golf Club Gothenburg, Neb.
92. Sunday River Golf Club Newry, Maine
93. The Golf Club at Redlands Mesa Grand Junction, Colo.
94. La Quinta Resort (Mountain) La Quinta, Calif.
95. Rustic Canyon Golf Course Moorpark, Calif.
96. TPC Deere Run Silvis, Ill.
97. Bay Harbor Golf Club (Links/Quarry) Bay Harbor, Mich.
98. Wynn Las Vegas Las Vegas, Nev.
99. Grayhawk Golf Club (Talon) Scottsdale, Ariz.
100. Circling Raven Golf Club Worley, Idaho