The gushing for Pajaro was always because of Pete, he's good people (as is Charlie, Bobby and Ryan). There is little if any architectural merit to the course, its inclusion on any "must play" list is due to the price.
Pete liked to keep the course firm but as a general rule, it is a simple course, with attributes than many clamor for: short par 4s, firm and fast, and trees, and the fast greens made the course no pushover. I've played 6 or 7 rounds at Pajaro (I am a member) this year, but none since August. After Pete left, they soften the course a bit.
It is winter time in California, conditions are going to be hit or miss based on rain and disease/damage to the turf. Pasatiempo and Pajaro fall into his category.
And to date, the Pasatiempo area has had almost twice as much rainfall as the Pajaro area. Pasatiempo has a far bigger maintenance budget and completed drainage work in the past few years, so which course is drier could be a toss-up.