Rob, I have little use for lists for the exact reason you are contemplating. Does the architect of a constrained site with a meager budget do a better job than one who is given a 1,000 acres of Sandhills land and just has to "find" 18-holes? Without knowing the particulars of the development criteria, one is just judging the final outcome.
As an aside to TD's story RE:#2, I thought it was an interesting commentary on Perception when he pointed it out. But, what I found even more facinating was when he explained the work he did between the tee and green on the following par 3 #3. I'm sure 99.9% of all who played it (including our GCA group) would have never guessed that it was all manufactured - it looked so natural.
Although I have played many of the "top" courses, I rather like to seek out no-name and un-ranked courses to see if there is anything "off-the-radar". Imagine what one would be missing if they passed on North Berwick "just because it wasn't in the top 100".