John,
The box on top of the bunker is a flush out intended to allow the super to put a hose in from the top to flush out clogged pipes. If it had a open cover, it could also be an air vent because letting air in helps water flow (fill a straw, put your finger over it, the water stays, take your finger off, the water flows)
Even though big heads throw 108', it doesn't mean you get good coverage that far out. In fact, the amount of precipitation drops from 100% of what comes out the nozzle at 1" away from the sprinkler, to 0% of what comes out that nozzle at 108 feet. You need at least two rows to overlap and get good coverage in the fw and then you probably get good coverage out to about half the radius throw. Two rows would cover about 216', but most irrigation designers would use triple or quad row at smaller spacing to get more uniform coverage.
Both more rows on through the greens areas and part to part heads around greens have proven to reduce wet spots, properly run, not add to them. Most wet spots, like at my home course as Lou Duran has occaisionally mentioned are the result of having to run a single row fw head, or a green head far longer than necessary to get the furthest area from the sprinklers wet enough to grow grass.
More heads equal less water. Some new systems report over 40% water savings - 20% each from the design of the heads and their spacing, and another 20% from the control system.
I am also leery of your assessment of blame on everyone involved based soley on what you say. You don't really know, I presume, what is in the gca or contractors agreement with the owner. Many reduce services to save money, and then rely on their staffs to monitor the construction. That often works well since the super will have the most to lose from bad construction, but if that person is non confrontational and shies away from the necessary tough discussions, sometimes it doesn't work out as well as hoped.