Fishers Island is the most notable omission for me. However, you can't fit 10 courses on one list. Is Teeth of the Dog better than Old Head or Tralee? Probably. But Old Head has those spectacular cliffs and peninsular location that make it unique in the golf world. Tralee has the castles and the movie set beach. It was probably a fun show to watch, even if it didn't demonstrate the highest knowledge of golf course architecture.
Personally, I'm a big fan of the Top Ten shows on Golf Channel, if for no other reason than the fact that I can argue with yet another golf-related list.