Graves and Cornish, in "Classic Golf Hole Design," describe the following NLE par 3s as Shorts modeled after the Macdonald/Raynor Short template.
-- Timber Point, 12, Alison. (Wexler, in "Missing Links," lists it as 140 yards, and says it was the course's most memorable hole, played across the water to an elevated green completely surrounded by sand. The picture depicts a large green and a real "do or die" feel to the hole -- essentially a green perched up on a sandbar surrounded by water.
-- El Caballero, 17, Bell and Thomas. Wexler lists it as 115 yds. but suggests it played as short as 95, with the shot to a small and highly contoured green.
-- Meadowbrook Hunt Club, 10, Emmet. Wexler lists at 140 yds, and played to a green surrounded by bunkers, but also suggests it once may have been an island green. (On an earlier thread by Dan Moore about modern templates, I argued Dye's 17th at TPC is a modern version of a Short, with water replacing sand. Wexler says Emmet's 10th may have originally played shorter to an island green, a design scheme used by Dev.)
-- Boca Raton, 14, Flynn. Graves and Cornish say the link to a Macdonald/Raynor Short template is "tenuous;" Wexler lists it playing at 135 yds, near the standard yardage for a template Short. Fronted by bunkers, but not surrounded, according to the drawings in Lost Links.
-- Deepdale 8 (130 yds), Gibson Island 8 (157 yds), Lido 14 (148 yds), the Links at Roslyn 8 (150 yds), Shinnecock Hills (original) 3 (120 yds), all Macdonald/Raynor. The pictures in Missing Links show good detail on the Gibson Island Short, which along with the Lido's 14th seem to most closely follow the Short template standards of a somewhat perched-up, largish round green surrounded by sand.